# filelist

dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/nbnxm/opencl
filetypes: fffff
filenames:
  nbnxm_gpu_buffer_ops_internal_ocl.cpp/nbnxm_ocl.cpp/nbnxm_ocl_data_mgmt.cpp/nbnxm_ocl_jit_support.cpp/nbnxm_ocl_types.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/nbnxm/kernels_reference
filetypes: ffffffff
filenames:
  kernel_gpu_ref.cpp/kernel_gpu_ref.h/kernel_ref.cpp/kernel_ref.h/kernel_ref_inner.h/kernel_ref_outer.h/kernel_ref_prune.cpp/kernel_ref_prune.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/fft
filetypes: fffffffffffffff
filenames:
  calcgrid.cpp/calcgrid.h/fft.cpp/fft.h/fft5d.cpp/fft5d.h/fft_fftw3.cpp/gpu_3dfft.cpp/gpu_3dfft.h/gpu_3dfft_impl.cpp/gpu_3dfft_impl.h/gpu_3dfft_ocl.cpp/gpu_3dfft_ocl.h/parallel_3dfft.cpp/parallel_3dfft.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/external/thread_mpi/src
filetypes: ffffffffffffffffffffffffffffffff
filenames:
  alltoall.cpp/atomic.cpp/barrier.cpp/bcast.cpp/collective.cpp/collective.h/comm.cpp/errhandler.cpp/event.cpp/gather.cpp/group.cpp/impl.h/list.cpp/lock.cpp/numa_malloc.cpp/once.cpp/p2p.h/p2p_protocol.cpp/p2p_send_recv.cpp/p2p_wait.cpp/profile.cpp/pthreads.cpp/pthreads.h/reduce.cpp/reduce_fast.cpp/scan.cpp/scatter.cpp/tmpi_init.cpp/tmpi_malloc.cpp/tmpi_ops.h/topology.cpp/type.cpp


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/topology/include/gromacs/topology
filetypes: ffffffff
filenames:
  atomsbuilder.h/exclusionblocks.h/invblock.h/mtop_atomloops.h/mtop_lookup.h/mtop_util.h/residuetypes.h/topsort.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/options
filetypes: fffffffffffffffffffffffffff
filenames:
  abstractoption.cpp/abstractoptionstorage.h/abstractsection.cpp/abstractsection.h/basicoptions.cpp/basicoptionstorage.h/behaviorcollection.cpp/behaviorcollection.h/filenameoption.cpp/filenameoptionmanager.cpp/filenameoptionstorage.h/isectionstorage.h/optionmanagercontainer.h/options.cpp/options_impl.h/optionsassigner.cpp/optionsassigner.h/optionsection.cpp/optionsection.h/optionstoragetemplate.h/optionsvisitor.cpp/optionsvisitor.h/timeunitmanager.cpp/treesupport.cpp/treesupport.h/valueconverter.h/valuestore.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/external/clFFT/src/statTimer
filetypes: ffffffff
filenames:
  statisticalTimer.CPU.cpp/statisticalTimer.CPU.h/statisticalTimer.GPU.cpp/statisticalTimer.GPU.h/statisticalTimer.extern.cpp/statisticalTimer.extern.h/statisticalTimer.h/stdafx.cpp


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/applied_forces/qmmm
filetypes: fffffffffff
filenames:
  qmmm.cpp/qmmm.h/qmmmforceprovider.h/qmmmforceprovider_stub.cpp/qmmminputgenerator.cpp/qmmminputgenerator.h/qmmmoptions.cpp/qmmmoptions.h/qmmmtopologypreprocessor.cpp/qmmmtopologypreprocessor.h/qmmmtypes.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/coordinateio
filetypes: ffffdffffdff
filenames:
  coordinatefile.cpp/coordinatefile.h/coordinatefileenums.h/frameconverterenums.h/frameconverters/iframeconverter.h/ioutputadapter.h/outputadaptercontainer.cpp/outputadaptercontainer.h/outputadapters/requirements.cpp/requirements.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/mdtypes
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  atominfo.h/awh_correlation_history.h/awh_history.cpp/awh_history.h/awh_params.h/checkpointdata.cpp/checkpointdata.h/commrec.cpp/commrec.h/df_history.cpp/df_history.h/edsamhistory.h/enerdata.h/energyhistory.cpp/energyhistory.h/fcdata.h/forcebuffers.cpp/forcebuffers.h/forceoutput.h/forcerec.h/group.cpp/group.h/iforceprovider.cpp/iforceprovider.h/imdmodule.h/imdoutputprovider.h/imdpoptionprovider.h/inputrec.cpp/interaction_const.cpp/interaction_const.h/locality.h/md_enums.cpp/mdatom.h/mdrunoptions.h/multipletimestepping.cpp/multipletimestepping.h/nblist.h/observableshistory.cpp/observableshistory.h/observablesreducer.cpp/observablesreducer.h/pull_params.h/pullhistory.h/simulation_workload.h/state.cpp/state.h/state_propagator_data_gpu.h/state_propagator_data_gpu_impl.cpp/state_propagator_data_gpu_impl.h/state_propagator_data_gpu_impl_gpu.cpp/swaphistory.h/threaded_force_buffer.cpp/threaded_force_buffer.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/api/legacy/include/gromacs/selection
filetypes: fffffffff
filenames:
  indexutil.h/nbsearch.h/position.h/selection.h/selectioncollection.h/selectionenums.h/selectionoption.h/selectionoptionbehavior.h/selectionoptionmanager.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/ewald
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  calculate_spline_moduli.cpp/calculate_spline_moduli.h/ewald.cpp/ewald.h/ewald_utils.cpp/ewald_utils.h/long_range_correction.cpp/long_range_correction.h/pme.cpp/pme.h/pme_coordinate_receiver_gpu.h/pme_coordinate_receiver_gpu_impl.cpp/pme_force_sender_gpu.h/pme_force_sender_gpu_impl.cpp/pme_gather.cpp/pme_gather.h/pme_gpu.cpp/pme_gpu_constants.h/pme_gpu_grid.h/pme_gpu_internal.cpp/pme_gpu_internal.h/pme_gpu_ocl_stubs.cpp/pme_gpu_program.cpp/pme_gpu_program.h/pme_gpu_program_impl.cpp/pme_gpu_program_impl.h/pme_gpu_program_impl_ocl.cpp/pme_gpu_settings.h/pme_gpu_staging.h/pme_gpu_timings.cpp/pme_gpu_timings.h/pme_gpu_types.h/pme_gpu_types_host.h/pme_gpu_types_host_impl.h/pme_grid.cpp/pme_grid.h/pme_internal.h/pme_load_balancing.cpp/pme_load_balancing.h/pme_only.cpp/pme_only.h/pme_output.h/pme_pp.cpp/pme_pp.h/pme_pp_comm_gpu.h/pme_pp_comm_gpu_impl.cpp/pme_pp_communication.h/pme_redistribute.cpp/pme_redistribute.h/pme_simd4.h/pme_solve.cpp/pme_solve.h/pme_spline_work.cpp/pme_spline_work.h/pme_spread.cpp/pme_spread.h/spline_vectors.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/taskassignment
filetypes: ffffdfffff
filenames:
  decidegpuusage.cpp/decidesimulationworkload.cpp/findallgputasks.cpp/findallgputasks.h/include/reportgpuusage.cpp/reportgpuusage.h/resourcedivision.cpp/taskassignment.cpp/usergpuids.cpp


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/mdrun
filetypes: ffffffffffffffffffffffffffff
filenames:
  isimulator.h/legacymdrunoptions.cpp/legacymdrunoptions.h/legacysimulator.cpp/legacysimulator.h/md.cpp/mdmodules.cpp/mdmodules.h/membedholder.cpp/membedholder.h/mimic.cpp/minimize.cpp/replicaexchange.cpp/replicaexchange.h/rerun.cpp/runner.cpp/runner.h/shellfc.cpp/shellfc.h/simulationcontext.cpp/simulationcontext.h/simulationinput.cpp/simulationinput.h/simulationinputhandle.cpp/simulationinputhandle.h/simulatorbuilder.cpp/simulatorbuilder.h/tpi.cpp


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/tables
filetypes: fffffffff
filenames:
  cubicsplinetable.cpp/cubicsplinetable.h/forcetable.cpp/forcetable.h/quadraticsplinetable.cpp/quadraticsplinetable.h/splineutil.cpp/splineutil.h/tableinput.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/api/legacy/include/gromacs/options
filetypes: ffffffffffff
filenames:
  abstractoption.h/basicoptions.h/filenameoption.h/filenameoptionmanager.h/ioptionsbehavior.h/ioptionscontainer.h/ioptionscontainerwithsections.h/ivaluestore.h/optionfiletype.h/optionflags.h/options.h/timeunitmanager.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/utility
filetypes: ffffffffffffffffffffffffdffffffffffffffffffffffffffff
filenames:
  alignedallocator.cpp/any.cpp/basenetwork.cpp/baseversion.cpp/baseversion_gen.h/binaryinformation.cpp/booltype.cpp/compare.cpp/coolstuff.cpp/cstringutil.cpp/datafilefinder.cpp/directoryenumerator.cpp/errorcodes.cpp/errorcodes.h/errorformat.cpp/errorformat.h/exceptions.cpp/fatalerror.cpp/fileredirector.cpp/filestream.cpp/futil.cpp/gmxassert.cpp/gmxomp.cpp/ikeyvaluetreeerror.cpp/include/init.cpp/inmemoryserializer.cpp/int64_to_int.cpp/keyvaluetree.cpp/keyvaluetreemdpwriter.cpp/keyvaluetreeserializer.cpp/keyvaluetreetransform.cpp/logger.cpp/loggerbuilder.cpp/message_string_collector.cpp/mpiinfo.cpp/niceheader.cpp/nodelete.h/path.cpp/physicalnodecommunicator.cpp/pleasecite.cpp/programcontext.cpp/smalloc.cpp/strconvert.cpp/strdb.cpp/stringstream.cpp/stringutil.cpp/sycl_version_information.cpp/sycl_version_information.h/sysinfo.cpp/textreader.cpp/textwriter.cpp/txtdump.cpp


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/api/legacy/include/gromacs
filetypes: dddddddddddd
filenames:
  analysisdata/fileio/math/mdtypes/options/pbcutil/restraint/selection/topology/trajectory/trajectoryanalysis/utility


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/external/colvars
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  colvar.cpp/colvar.h/colvar_UIestimator.h/colvar_arithmeticpath.h/colvar_geometricpath.h/colvar_neuralnetworkcompute.cpp/colvar_neuralnetworkcompute.h/colvar_rotation_derivative.h/colvaratoms.cpp/colvaratoms.h/colvarbias.cpp/colvarbias.h/colvarbias_abf.cpp/colvarbias_abf.h/colvarbias_alb.cpp/colvarbias_alb.h/colvarbias_histogram.cpp/colvarbias_histogram.h/colvarbias_histogram_reweight_amd.cpp/colvarbias_histogram_reweight_amd.h/colvarbias_meta.cpp/colvarbias_meta.h/colvarbias_restraint.cpp/colvarbias_restraint.h/colvarcomp.cpp/colvarcomp.h/colvarcomp_alchlambda.cpp/colvarcomp_angles.cpp/colvarcomp_apath.cpp/colvarcomp_combination.cpp/colvarcomp_coordnums.cpp/colvarcomp_distances.cpp/colvarcomp_gpath.cpp/colvarcomp_neuralnetwork.cpp/colvarcomp_protein.cpp/colvarcomp_rotations.cpp/colvarcomp_volmaps.cpp/colvardeps.cpp/colvardeps.h/colvargrid.cpp/colvargrid.h/colvargrid_def.h/colvarmodule.cpp/colvarmodule.h/colvarmodule_refs.h/colvarmodule_utils.h/colvarparams.cpp/colvarparams.h/colvarparse.cpp/colvarparse.h/colvarproxy.cpp/colvarproxy.h/colvarproxy_io.cpp/colvarproxy_io.h/colvarproxy_replicas.cpp/colvarproxy_system.cpp/colvarproxy_system.h/colvarproxy_tcl.cpp/colvarproxy_tcl.h/colvarproxy_volmaps.cpp/colvarproxy_volmaps.h/colvars_memstream.cpp/colvars_memstream.h/colvarscript.cpp/colvarscript.h/colvarscript_commands.cpp/colvarscript_commands.h/colvarscript_commands_bias.cpp/colvarscript_commands_bias.h/colvarscript_commands_colvar.cpp/colvarscript_commands_colvar.h/colvartypes.cpp/colvartypes.h/colvarvalue.cpp/colvarvalue.h/nr_jacobi.cpp/nr_jacobi.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/domdec
filetypes: fffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  atomdistribution.cpp/atomdistribution.h/box.cpp/box.h/builder.h/cellsizes.cpp/cellsizes.h/collect.cpp/collect.h/computemultibodycutoffs.cpp/computemultibodycutoffs.h/distribute.cpp/distribute.h/dlb.cpp/dlb.h/dlbtiming.cpp/dlbtiming.h/domdec.cpp/domdec.h/domdec_constraints.cpp/domdec_constraints.h/domdec_internal.h/domdec_network.cpp/domdec_network.h/domdec_setup.cpp/domdec_setup.h/domdec_specatomcomm.cpp/domdec_specatomcomm.h/domdec_struct.h/domdec_vsite.cpp/domdec_vsite.h/dump.cpp/dump.h/ga2la.cpp/ga2la.h/gpuhaloexchange.h/gpuhaloexchange_impl.cpp/hashedmap.h/localatomset.cpp/localatomset.h/localatomsetdata.cpp/localatomsetdata.h/localatomsetmanager.cpp/localatomsetmanager.h/localtopology.cpp/localtopology.h/localtopologychecker.cpp/localtopologychecker.h/makebondedlinks.cpp/makebondedlinks.h/mdsetup.cpp/mdsetup.h/nsgrid.cpp/nsgrid.h/options.h/partition.cpp/partition.h/redistribute.cpp/redistribute.h/reversetopology.cpp/reversetopology.h/utility.cpp/utility.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/applied_forces/densityfitting
filetypes: ffffffffffff
filenames:
  densityfitting.cpp/densityfitting.h/densityfittingamplitudelookup.cpp/densityfittingamplitudelookup.h/densityfittingforceprovider.cpp/densityfittingforceprovider.h/densityfittingoptions.cpp/densityfittingoptions.h/densityfittingoutputprovider.cpp/densityfittingoutputprovider.h/densityfittingparameters.cpp/densityfittingparameters.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/api/gmxapi/include/gmxapi
filetypes: dfffffdffff
filenames:
  compat/context.h/exceptions.h/gmxapi.h/gmxapicompat.h/gromacsfwd.h/md/md.h/session.h/status.h/system.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/selection
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filenames:
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dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/listed_forces
filetypes: fffffffffffffffffffff
filenames:
  bonded.cpp/bonded.h/disre.cpp/disre.h/listed_forces.cpp/listed_forces.h/listed_forces_gpu.h/listed_forces_gpu_impl.cpp/listed_internal.cpp/listed_internal.h/manage_threading.cpp/manage_threading.h/orires.cpp/orires.h/pairs.cpp/pairs.h/position_restraints.cpp/position_restraints.h/restcbt.cpp/restcbt.h/utilities.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/api/legacy/include/gromacs/topology
filetypes: ffffffffff
filenames:
  atomprop.h/atoms.h/block.h/forcefieldparameters.h/idef.h/ifunc.h/index.h/symtab.h/topology.h/topology_enums.h


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/nbnxm
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filenames:
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dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/pbcutil
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filenames:
  boxutilities.cpp/com.cpp/include/mshift.cpp/pbc.cpp/pbc_simd.cpp/pbcenums.cpp/pbcmethods.cpp/rmpbc.cpp


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/math
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filenames:
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dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs
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filenames:
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dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/trajectoryanalysis
filetypes: ffffdfffff
filenames:
  analysismodule.cpp/analysissettings.cpp/analysissettings_impl.h/cmdlinerunner.cpp/modules/modules.cpp/modules.h/runnercommon.cpp/runnercommon.h/topologyinformation.cpp


filenames: resourceassignment.h
filetypes: f
dirname:
  /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/serial_d/redhat-linux-build/api/gmxapi/include/gmxapi/mpi


dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/utility/include/gromacs/utility
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dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/api/legacy/include/gromacs/utility
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dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/simd/include/gromacs/simd/impl_x86_sse2
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dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/gmxpreprocess
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dirname: /usr/src/debug/gromacs-2024.5-1.fc40.x86_64/src/gromacs/commandline
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